Journal of Northern Agriculture ›› 2020, Vol. 48 ›› Issue (3): 32-38.doi: 10.12190/j.issn.2096-1197.2020.03.05

• Germplasm resources·Molecular biology • Previous Articles     Next Articles

Cloning and bioinformatics analysis of CmBADH gene of Calligonum mongolicum

FANG Yongyu1,2, HAO Lifen1, NIE Lizhen1,2, DING Haijun1,2, WANG Liwei1, ZHAO Xiaoqing1, SUN Jie1,2, SHI Zhidan1, HE Jiangfeng1   

  1. 1. Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences,Hohhot 010031,China;
    2. Inner Mongolia Key Laboratory of Plant Proteomics,Hohhot 010031,China
  • Received:2020-04-24 Online:2020-06-20 Published:2020-08-14

Abstract: 【Objective】To reveal the gene sequence of betaine aldehyde dehydrogenase (CmBADH) in the antistress plant Calligonum mongolicum.【Methods】RACE technology was used to clone the full-length sequence of CmBADH gene and conduct bioinformatics analysis of its gene and protein sequences.【Results】The cDNA sequence of CmBADH gene was 1 863 bp,and the ORF was 1 506 bp,encoding 501 amino acids.Blastn showed that the BADH similarity between CmBADH and Sesuvium portulacastrum,Quercus lobata,and Kalidium foliatum reached 80.04%,79.97%,and 79.55%,respectively.Its relative molecular weight was 123.46 kDa,isoelectric point (pI) 5.01,and the protein sequence had 16 phosphorylation sites.No transmembrane domain;no signal peptide sites;contains a betaine aldehyde dehydrogenase domain (PLN02467).The secondary structure showed that alpha helix accounts for 43.31%,random coil 31.94%,extended strand 17.37% and beta turn 7.38%.The model of tertiary structure is ellipsoid.【Conclusion】The determination of CmBADH gene sequence provides a basis for future studies on the antistress function of CmBADH gene in Calligonum mongolicum.

Key words: Calligonum mongolicum, CmBADH gene, RACE cloning, Bioinformatics analysis

CLC Number: 

  • S718.5