畜牧与饲料科学 ›› 2017, Vol. 38 ›› Issue (2): 1-1.doi: 10.12160/j.issn.1672-5190.2017.02.001

• 基础科学 • 上一篇    下一篇

产琥珀酸丝状杆菌内切葡聚糖酶end-1基因密码子偏好性分析

苏少锋[1,2];萨初拉[2];刘红葵[2];赵小庆[2];吴青海[2];其布日[2];王蕴华[2];呼和[2]   

  1. [1]内蒙古农业大学动物科学学院,内蒙古呼和浩特010018 [2]内蒙古自治区农牧业科学院生物技术研究中心,内蒙古呼和浩特010031
  • 出版日期:2017-02-20 发布日期:2017-02-20
  • 通讯作者: 苏少锋
  • 作者简介:苏少锋(1984~),男,研究实习员,博士研究生,主要研究方向为微生物分子生物学。 通讯作者:呼和(1962-),男,研究员,博士,主要研究方向为饲料生物技术。
  • 基金资助:
    公益性行业(农业)科研专项“北方作物秸秆饲用化利用技术研究与示范”(201503134); 内蒙古农牧业创新基金项目“瘤胃微生物纤维降解酶基因在乳酸菌中表达的研究”(2011CXJJM01-3)

Analysis on Codon Usage Bias of end-1 Gene in Fibrobacter succinogenes

SU Shao -feng1.2, Sachula2.LIU Hong -kui2, ZHAO Xiao -qing2, WU Qing -hai2, Qiburi2, WANG Yun -hua2, Huhe2 ( 1 .College of Animal Science and Technology, Inner Mongolia Agricultural University, Hohhot 010018, China ; 2.Biotechnology Research Center, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China)   

  • Online:2017-02-20 Published:2017-02-20

摘要: 产琥珀酸丝状杆菌(Fibrobacter succinogenes)end-1基因表达的内切葡聚糖酶是能够降解纤维素的纤维素复合酶中的一种。利用Codon W、CUSP和CHIPS等相关软件分析产琥珀酸丝状杆菌内切葡聚糖酶end-1基因的密码子使用情况,比较end-1基因与大肠杆菌、酿酒酵母菌、枯草芽胞杆菌以及乳酸乳球菌的密码子偏好性。结果表明,内切葡聚糖酶end-1基因偏好使用G/C结尾的密码子,其中有25种偏好密码子(RSCU值大于1),偏好性较强的有GCT、TGC、GAA、GGT、CAC、ATC、CTC、CCG、CGT、TCC和TAC(RSCU值均大于或等于2);end-1基因的密码子偏好性与4个宿主的基因组密码子偏好性差异较大,其中与乳酸乳球菌的密码子偏好性差异最大。若使该基因在上述几种表达系统中得到较高水平的表达,则需要对其密码子进行优化。

Abstract: Fibrobacter succinogenes endoglucanase encoded by end-1 is one of the cellulose compound enzymes with capability to degrade cellulose. The codon usage bias of end-1 gene in Fibrobacter succinogenes was characterized by using online software Codon W, CUSP and CHIPS and subsequently compared with that of Escherichia coli, Saccharomyces cerevisiae, Bacillus subtillis and Lactococcus lactis. The results showed that end-1 gene preferred to use codons ending with G/C; a total of 25 biased codons were found(RSCU1); the codons with stronger bias were GCT, TGC, GAA, GGT, CAC, ATC, CTC, CCG, CGT, TCC and TAC(RSCU ≥2); there were differences in codon usage bias of end-1 gene between Fibrobacter succinogenes and the 4 hosts genome, and the most obvious differences were found in Lactococcus lactis. The combined data suggest that the codons are required to be optimized when it is heterologously expressed in the 4 hosts at a high level.

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