畜牧与饲料科学 ›› 2013, Vol. 34 ›› Issue (1): 18-18.doi: 10.12160/j.issn.1672-5190.2013.01.008

• 基础科学 • 上一篇    下一篇

禽呼肠孤病毒C-98、T-98分离株S2基因的克隆及序列分析

何建文[1] 党娟[1] 关平原[1,2] 李平安[1,2] 高魁[3]   

  1. [1]内蒙古农业大学兽医学院,内蒙古呼和浩特010018 [2]农业部动物疾病临床诊疗技术重点实验室.内蒙古呼和浩特010018 [3]内蒙古鄂尔多斯市东胜区兽医局,内蒙古东胜区017000
  • 出版日期:2013-01-20 发布日期:2013-01-20
  • 通讯作者: 何建文
  • 作者简介:何建文(1983-),男,硕士,主要研究方向为动物传染病学。 通讯作者:关平原(1961-),男,教授,博士,主要研究方向为预防兽医学。
  • 基金资助:
    内蒙古自然科学基金资助项目(200308020405).

Cloning and Sequence Analysis of S2 Gene of Avian Reovirus C-98 and T-98 Strains

HE Jian-wen, DANG Juan, GUAN Ping-yuan, LI Ping-an, GAO Kui ( 1.College of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot 010018, China; 2.Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot 010018, China;3.Bureau of Veterinary Medicine of Dongsheng Distract in Ordos City, Dongsheng 017000,China)   

  • Online:2013-01-20 Published:2013-01-20

摘要: 参考GenBank中禽呼肠孤病毒176株(ARV176)S2基因设计引物.对禽呼肠孤病毒内蒙古地区分离株C-98和禽呼肠孤病毒天津地区分离株T-98进行总RNA的提取,以其为模板,应用RT—PCR方法扩增病毒S2基因的cDNA片段,将纯化的cDNA片段克隆到pEASY-T1栽体后进行序列测定。结果表明,获得的ARVC-98和ARVT-98的S2基因全长为1324bp,包括15bp的5’非编码区和58bp的3’非编码区,阅读框位于5’端第16位核苷酸和第1266位核苷酸之间。ARVC-98和ARVT-98分离株S2基因的核苷酸同源性很高.达到了99.8%。将C-98、T-98株的S2基因核苷酸序列和参考毒株的|s2基因序列进行同源性分析,结果表明,ARVC-98和ARVT-98分离株的Js2基因与参考毒株ARV176、ARV918、ARV919、ARV1733、ARVGX2010、ARVS1133和DRVYJLS2基因的核苷酸同源性最高,在99.2%-99.8%之间;与参考毒株ARV138和ARVAVS—BS2基因的核苷酸同源性在92.1%-94.1%之间:与参考毒株ARV601SI、ARV916和ARV1017—1Js2基因的核苷酸同源性在87.3%~87.8%之间;与参考毒株DRV091、DRVS12和DRVS14Js2基因的核苷酸同源性在77.3%-78.2%之间;与参考毒株MRV3、MRV3-iin-1和MRV3-T3D52基因的核苷酸同源性最低.在2.4%。5.5%之间。遗传进化树分析显示:ARVC-98和ARVT-98分离株与参考毒株共分为4个遗传进化分支。

Abstract: According to the $2 gene sequence of Avian reovirus strain 176 (ARV 176) published in GenBank, two pairs of primers were synthesized. The total RNA of ARV isolate T-98 and C-98 isolated in Tianjin and Inner Mongolia were extracted. The $2 gene of virus was amplified by RT-PCR and then cloned into pESAY-T1 plasmid and sequenced. The results showed that the $2 genes of ARV C-98 and ARV T-98 isolates were 1 324 bp, included 15 bp 5' non-coding region and 58 bp 3' non-coding region, and contained one ORF( 16-1 266). Compared nucleotide sequence showed that high homology was 99.8% between ARV T-98 and ARV C-98. The homology of $2 genes of ARV C-98 and ARV T-98 isolates was 99.2%-99.8% comparing with S2 genes of reference strains ARV 176, ARV 918, ARV 919, ARV 1733, ARV GX2010, ARV S1133 and DRV YJL, and was 92.1% -94.1% comparing with $2 genes of reference strains ARV 138 and ARV AVS-B, and was 87.3%-87.8% comparing with $2 genes of reference strains ARV 601SI, ARV 916 and ARV 1017-1, and was 77.3%-78.2% comparing with S2 genes of reference strains DRV 091,DRV S!2 and DRV S14, and was 2.4%-5.5% comparing with S2 genes of reference strains MRV 3, MRV 3-jin- 1 and MRV 3-T3D. Phylogenetic analysis indicated that S2 genes of ARV T-98 and C-98 and 20 ARV strains were separated into four lineages.

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